Movies from left to right correspond to first three projections above.
ImageJ stack registration
last updated 20160331_1206
Notes on stackreg downloaded from and explained at http://bigwww.epfl.ch/thevenaz/stackreg/
Precise version used here java code and class executable.
A colleage at a previous job also posted this http://www.einstein.yu.edu/segallLab/page.aspx?id=18226
Max projection through 31 frame movie collected by a PhD candidate max projected after median filtered bg subtraction.
Movies from left to right correspond to first three projections above.
The following first had the outline of the structure in each frame roughly manually traced and then snipped and recentered into a 256 X 256 pixel box before running the stackreg plugin.
comments, questions, suggestions: Michael.Cammer@med.nyu.edu