Mark location found on plot profile curve on original image.

Author: Michael Cammer michael.cammer@med.nyu.edu
History:

macro_to_convert_from_plot profile_to_image_v100.txt is the first iteration. User manually finds points on plot profile curve and enters them manually one-by-one into the remapping function.

Source:

see above

Installation:

It's just a macro. Plugins > Macros > Install...
Or open as a text file and install or run from the menu at the top of the window.

Description:

This macro is for mapping intensity points of interest back on the original image.

ImageJ 1.51 macro language -- Michael Cammer 20170222
If you use this, please acknowledge DART Microscopy Lab at NYULMC.

User draws (freehand, straight, or segmented) line selection on image.
Runs "Get X Y and intensity values".
Chooses location on curve, remembers X location.
User clicks on image window, runs "Mark spot on cell [q]", and inserts X location.
Macro marks on the image.

Suggested features to add:
= Draw location on as overlay in color(s).
= Instead of user choosing location(s) in Plot Profile window, the macro marks the points based on
criteria such as two brightest points along ROI.

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See Also:

 

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