/*  Michael Cammer for Microscopy Core, Office of Collaborative Science, NYU Langone Medical Center
    Please cite NYULMC OCS Microscopy Core if data published using these methods  
    http://www.med.nyu.edu/ocs/microscopy/acknowledging-us
    v100 20150422

   This is a very simple method to save all ROIs in the ROI Manager in the same directory/folder
   as the image.
   It does not take into account specific locations in hyperstacks (channels, z slices, frames, times, etc).
   It simply saves the ROI Manger as-is.

*/



//==================================================================
macro "Save ROI Manager [F7]" {
   imageDir = getDirectory("image");                         // where to save results
   originalTitle = replace(getTitle(), ".tif", "");;    
   newName = imageDir + originalTitle + ".zip";
   roiManager("Save", newName);
}