macro ".czi 96 wells to stack & montage" {
   contrastEnhance = getBoolean("Do you want to linearly enhance contrast of each well?");
   imagePath = getDirectory("image");
   title = replace(getTitle(), ".czi", "");
   title = substring(title, 0, (lengthOf(title)/2)-2);  // because LOCI doubles the title
   run("Concatenate...", "all_open title=Concat");
   getDimensions(width, height, channels, slices, frames);
   if (channels==2) {
     Stack.setDisplayMode("composite");
     Stack.setChannel(1);  run("Green");
     Stack.setChannel(2);  run("Grays");
   }
   saveName = imagePath + title + "_original";
   saveAs("Tiff", saveName);

   if (contrastEnhance ==1) {
     for (s=1; s<=nSlices(); s++)
       run("Enhance Contrast...", "saturated=0 normalize");
   }

   run("Channels Tool...");
   run("Brightness/Contrast...");
   waitForUser("In Brightness/Contrast window, adjust each channel and click ok.");
   run("RGB Color", "frames");
   saveName = imagePath + title + "_RGB";
   saveAs("Tiff", saveName);   
   //if ((frames == 96) || (slices == 96)) {
     run("Make Montage...", "columns=12 rows=8 scale=1 first=1 last="+nSlices()+" increment=1 border=0 font=12");
     saveName = imagePath + title + "_montage";
     saveAs("Tiff", saveName); 
   //}  // if montaging
}